I've read the study and agree with some of the comments here that to get a real comparison it would have seemed more logical to have one group working at say 50-60 rpm and another at 80-90 rpm.
Ironically enough, I did my own experiment similar to this and my results have been drastically different.
Last year I was doing big gear workouts and this year I decided to scrap them in place of L3 sessions at my normal cadence which is around 85 rpm.
The results have shown an increase in my 20 min power by 5.7% by doing the L3 intervals vs. the big gear intervals last year.
In 2004 I did 6 weeks of 50-55 rpm workouts twice a week consisting of 5 min intervals with equal rest. I started with 60 min sessions and after a few weeks progressed to 90 mins.
In 2005 I did 6 1/2 weeks of L3 sessions twice a week of 60 min and progressed to 90 mins.
In between sessions were a combination of L1/2 and some group rides. For the most part what I did between them wasn't much different for the two years.
This is by no means a scientific study, but it's proven to me that doing big gear work isn't the best way to increase 20 min power.
Some may argue that the point in doing big gear work is to increase leg strength and not FTP, but to them I would argue that leg strength isn't a limiter in cycling performance so why bother working on it when FTP is the primary component to improving cycling performance.
Overall doing big gear work did increase my 20 min power, but just not as much as L3 at my normal cadence. The change was an increase of 3% doing big gear vs. an increase of 6.5% doing L3 at normal cadence.